PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_1BL_B15990028.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family WRKY
Protein Properties Length: 170aa    MW: 19030.4 Da    PI: 9.9878
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_1BL_B15990028.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY103.61.1e-323896159
                           ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                   WRKY  1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59
                           ldDgy+WrKYGqK vk+s fprsYYrCt ++C vkk vers++dp++v++tYeg+H h+
  Traes_1BL_B15990028.1 38 LDDGYRWRKYGQKAVKNSSFPRSYYRCTAPRCGVKKLVERSHQDPSTVVTTYEGRHGHP 96
                           59********************************************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.5E-332498IPR003657WRKY domain
SuperFamilySSF1182901.05E-283198IPR003657WRKY domain
PROSITE profilePS5081130.1483398IPR003657WRKY domain
SMARTSM007742.6E-353897IPR003657WRKY domain
PfamPF031061.1E-253996IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
TLLLVRRDEK EQKKKGKGEK KARGSRVAFA TKSEVDHLDD GYRWRKYGQK AVKNSSFPRS  60
YYRCTAPRCG VKKLVERSHQ DPSTVVTTYE GRHGHPSPVA THRGQRMLMA TGADTAYSLA  120
TLQHQQDGFF SPGADVYASS VAHRVSEYGG MQFHADLLPD ATMGYQQGYC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-2931981077Probable WRKY transcription factor 4
2lex_A5e-2931981077Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3672161e-157AK367216.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2052P23.
GenBankKR8273971e-157KR827397.1 Triticum aestivum WRKY46 transcriptional factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002441585.18e-46hypothetical protein SORBIDRAFT_09g029810
SwissprotO229008e-41WRK23_ARATH; Probable WRKY transcription factor 23
TrEMBLW5A5621e-125W5A562_WHEAT; Uncharacterized protein
STRINGMLOC_44947.14e-88(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62337173
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29860.12e-40WRKY DNA-binding protein 71
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]